CDS
| Accession Number | TCMCG051C20917 |
| gbkey | CDS |
| Protein Id | XP_024459052.1 |
| Location | join(16554899..16555268,16555375..16555537,16555623..16555758,16555951..16556025,16556481..16556673,16557378..16557573,16557673..16557760,16557899..16558042,16558834..16558893,16558992..16559063,16560207..16560313,16560655..16560803,16561188..16561410,16561633..16561858,16562566..16562711,16563248..16563413,16564144..16564288,16564447..16564607,16564720..16564956) |
| Gene | LOC18100462 |
| GeneID | 18100462 |
| Organism | Populus trichocarpa |
Protein
| Length | 1018aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA17973 |
| db_source | XM_024603284.1 |
| Definition | probable RNA-dependent RNA polymerase 5 isoform X1 [Populus trichocarpa] |
EGGNOG-MAPPER Annotation
| COG_category | A |
| Description | Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03036 [VIEW IN KEGG] |
| KEGG_ko |
ko:K11699
[VIEW IN KEGG] |
| EC |
2.7.7.48
[VIEW IN KEGG]
[VIEW IN INGREDIENT] |
| KEGG_Pathway | - |
| GOs | - |
Sequence
| CDS: ATGGCAGAGATAAATAATGATAAAATAGTGCCATTGCCTTGTGCAGTGGAGGAACTGATAACCAAAATCTGTAGGGAGAAGGATCGAAGGCCGCTAGAAACCAATACGAGGTCGACACTGGCTTCGTTAGGGGAAGAAGTTGCTTTAAATATTCTCAGGAGAATTTCTGGTCAAGAGATTAGAAAAAGTTTTGACGGTTTCGTTCTGCACTTGGCCAAACAGTGCTCTCCTAATATCAATGCTTCTTCTTCTTCCCCCCACATGCACTCCTCCCTCTCCCCATCTCCTCAACAACCCCAGAATCGTACAAACACCCGTTTACTGATGAATTCTCAAAGTAATGTACTTTTTTTTTTTTCATTTCGAAATGGTGATTCTGGTGCTCAATCTCCAACTCCATTGAAGCTTGAAGGTTCATCAACCATGGATTCACAGAGACAGAGAGGAAGTGAGTCTACAACCAGTCAACATTTGGTGGCTTTGGGAGAGCTTGAGTTTAGAAAAGCCTTTCTTATCTTAAATTACCTTGGAGGAAAGAATTTGGAAGAGGTGGTATCCGCTGATCAAATTAGGGGGTATAAGGATTTGCCAATGGAAACATTTGAGTCAAAAATTTGGGACGCTTTTGGATGTAGGAGAGATTATATAAAGGAAGAAGATCGTGTCAAGTATCTTGATTGGGATTCTGGGAAAGCACACATCTATCATTGTCATGTTGATCCGGATGGAAGTTATAGGTTCAAGGGACCTTACCTCTCCAAGCAGAGAAATGTCCTGCAAAGGACCTTGGGAGATGACAATATCTTAATGGTAAAGTTTGAGGAGGTGAAAGATGAGAGATATTCAGTGAGCAGTTCTCTGGATAATTATTTTGCCAAGTACAACAAGGTTCTTAGAGAAGGGATTCATGTTGGTTTGCGTTGTTACCGCTTTTTTGTGTTTAAAGATGGAGGCAAAGAAGAAAAAAAGAAAGACCCGACCACTTCTCCTGTCAAGTGTTTTTTCGTCTGCATGGAGTCTGTTGCATCGGTTGATAATCAAGATAATATTTTGTGCGGGAAAACAATCCGTCAAGCTAGATCTGTTTTTATGCATGTGGACAATTTGTCCAGTTTGTCCAACTACATGGCTAGGTTTTCGCTGATTTTGTCAAAGACCATGAATCTGGAAGTTGATTTATCCTTTGTAGATATCAAGCCAATAGCTGATGAACCATGCCGGGATAAAGATGGTAATGCTGTTTACGGTACAGATGGGAAACCTCTTATACATACAGATGGAACTGGGTTTATATCGCATGATTTGGCTTTGAAATGCCCAAAGAATCAAGTCAAAGGAACTTGCCTCCAAGCTTCCAATATTGAGAGATTACGTGTTCATAATGAAGTCATGGAGCAAAATCCAGAATGTCTCCATGGGGATCCACCTTTGCTGATCCAGTTTCGTCTCTTCAATAATGGTAGAGCTGTCAAGGGAACTTTCCTTGTGAATAAGAAGCTTAATCATCGAACTCTGCACGTAAGGCCTTCTATGATTAAGGTTGAGACGGATCCAAAACTATCAAATACTTTTTCAAAAAATTCATTGGAGATAGTTGGAACCAGCTGTCGACCAAAGAAAACGTTCCTTTCAAAGAATTTAATTGCACTTCTTAGCTATGGTGGTGTTCCAGAAGAGTTTTTTATGGGAATATTGAATAATGCTCTGGAAGATGCCCATGGCATTCTCTCAAACAAAAAAGCAGCTCTACGAGTTGCACTTAATTATGGGGATATGGACGATAACATTGTTGCAACAATGATTGGCTGTGGGATTCCGCTAGAAGAACCGTATTTGCAACATCATTTGTCAATACTGAAGAAGGAAGAAAAGAAGAGTCTGAAAGGAGGAAAAATACCTGTGCCTGAATCATATTATTTGATGGGTACAGCTGATCCAACTGGACTCTTGGAGAGTGATGAAGTTTGCATAATACTAGATTGTGGACAGGTTTCAGGGGAGGTATTAGTCTATCGGAATCCAGGTTTACATTTTGGAGATATACATATTTTAAAGGCTACATATGTAAGGGAGTTGGAAGATTTTGTTGGAAATGCCAAGTATGCTATATTTTTCCCATGCAAAGGACCACGGTCTTTGGCAGATGAGATGTCAGGTGGTGATTTTGATGGCGACATGTTTTTTGTGTCAAGAAATCCTCGGCTTCTGGAAAACTTTAAACAAACGGAACCTTGGACACCTTCTACTTCAACCCCTAATGAGCCTAACAGAAAACCAAGTGAATTCTCTGATGAGGAGTTGGAGGTTGAGCTTTTCAAACTATTTTTGAGGAACAGGTTTCAGCCAAGTTTCACTGTGGGGGTGGCAGCGGATAGCTGGCTGGCAATGATGGATCGGCTTCTCACATTGGGAAATGATTGCACAGAAGAGATAGCTTGTGTGAAAAAAAATATCAATCTGTTGATTGATATATACTATGATGCTCTAGATGCTCCAAAGAAAGGTGGAAGAAAGATTGAAGTTCCAGAAGCTTTGAAGGCAGAGCTGTTCCCTCATTTTATGGAAAAAAACGAAAAGAAAACTTATCGATCAACTTCCATATTGGGAAAAATTTATGATAAAGTGAAAGCATACGAAGATATGGATCTGTCATCAAATGATGTTTGGAAACACCCTTGCTTTGACGGTGAAGTTCACGAGTCGTGCCTTGTGAAGTGGAAGGGACTCTACGGTCAATACAGGACGGAGATGCGCAATGCTCTCCAGGCTGGTAAAGAGAAGAACAACGAGGCTAATGAAGTCATAAAAAAATACAAGGAGATCTTATATGAAGCTGCGGAATTTAATTTGAGCAGACGAAGAGACGAGGAAATCTTTGAGGAGGCCAGGGCTCTATATCAGGTTACTTACAATCATGCCAAGAGGCAAGGAGCTGTTGGAAAATGCGGTTTTGCGTGGAGAGTCGCTGGTTTAGCTCTTTGCACGCTCTACGTTTTGAAGAATCAAGAAGAAAGACCTCTGATATGTTCACCATCTGCTCTCAAAGGGATTTTGTAG |
| Protein: MAEINNDKIVPLPCAVEELITKICREKDRRPLETNTRSTLASLGEEVALNILRRISGQEIRKSFDGFVLHLAKQCSPNINASSSSPHMHSSLSPSPQQPQNRTNTRLLMNSQSNVLFFFSFRNGDSGAQSPTPLKLEGSSTMDSQRQRGSESTTSQHLVALGELEFRKAFLILNYLGGKNLEEVVSADQIRGYKDLPMETFESKIWDAFGCRRDYIKEEDRVKYLDWDSGKAHIYHCHVDPDGSYRFKGPYLSKQRNVLQRTLGDDNILMVKFEEVKDERYSVSSSLDNYFAKYNKVLREGIHVGLRCYRFFVFKDGGKEEKKKDPTTSPVKCFFVCMESVASVDNQDNILCGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSFVDIKPIADEPCRDKDGNAVYGTDGKPLIHTDGTGFISHDLALKCPKNQVKGTCLQASNIERLRVHNEVMEQNPECLHGDPPLLIQFRLFNNGRAVKGTFLVNKKLNHRTLHVRPSMIKVETDPKLSNTFSKNSLEIVGTSCRPKKTFLSKNLIALLSYGGVPEEFFMGILNNALEDAHGILSNKKAALRVALNYGDMDDNIVATMIGCGIPLEEPYLQHHLSILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDGDMFFVSRNPRLLENFKQTEPWTPSTSTPNEPNRKPSEFSDEELEVELFKLFLRNRFQPSFTVGVAADSWLAMMDRLLTLGNDCTEEIACVKKNINLLIDIYYDALDAPKKGGRKIEVPEALKAELFPHFMEKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKHPCFDGEVHESCLVKWKGLYGQYRTEMRNALQAGKEKNNEANEVIKKYKEILYEAAEFNLSRRRDEEIFEEARALYQVTYNHAKRQGAVGKCGFAWRVAGLALCTLYVLKNQEERPLICSPSALKGIL |